Galaxy: Data intensive biology for everyone

Cloudman: Easily create compute clusters on the Cloud.

HiFive: Tools for handling HiC and 5C data

bx-python: Python package for working with genomic intervals, alignments, scores, etc.

ESPERR: Method for training classification models on multiple alignments and creating scores (e.g. Regulatory Potential).

MetaWRAP: Metagenomic data processing and genome extraction pipeline